Save the full AlertSystem state to disk

This helper writes the complete seurat_obj@misc[[misc_name]] list to an RDS file, so that AlertSystem results can be re-attached later without recomputing. This is equivalent to the RDS file written by AlertSystemScore(..., out_dir = ...) (the *_AlertSystem_info.rds file), but can be called manually at any time.

Usage

SaveAlertSystem(seurat_obj, file, misc_name = "AlertSystem")

Arguments

seurat_obj

A Seurat object with AlertSystem results stored in seurat_obj@misc[[misc_name]].

file

Path to an .rds file where the state will be saved (e.g. "AlertSystem_M6_M6_up_AlertSystem_info.rds").

misc_name

Name of the misc slot containing AlertSystem results. Default: "AlertSystem".

Value

Invisibly returns file.