Saves the complete state stored in seurat_obj@misc[[misc_name]]. The saved
RDS can later be attached to another compatible Seurat object using
LoadAlertSystem() without recomputing pathway scores.
Usage
SaveAlertSystem(seurat_obj, file, misc_name = "AlertSystem", overwrite = FALSE)
Arguments
- seurat_obj
A Seurat object containing an Alert System state.
- file
Destination .rds path.
- misc_name
Name of the @misc entry. Default is "AlertSystem".
- overwrite
Whether an existing file may be replaced.
Value
Invisibly returns the normalized output path.