MetaspotsByGroupsto aggregate neighboring ST spots prior to network analysis.
exclude_greyflag back to doing nothing in the
ModuleEigengenesfunction because it messed up some downstream tasks, will resolve in a future update.
ProjectModulesnow excludes modules with too many missing genes in the query dataset, tunable by the
MetacellsByGroupsif there are any groups that are excluded by
MetacellsByGroups, instead of the default “RNA”.
assayas an argument, clears up some issues with
ModuleEigengenesdoesn’t require a “counts” slot to be present in the given assay, but now it throws an error if the normalized data slot is missing.