Articles
All vignettes
- hdWGCNA in single-cell data
Tutorial for applying the core functions of hdWGCNA in single-cell data.
- Consensus network analysis
Tutorial for performing consensus co-expression network analysis.
- Module customization
Tutorial for customizing module colors and module names in hdWGCNA.
- Differential module eigengene (DME) analysis
Tutorial for performing differential module eigengene analysis.
- Enrichment analysis
Tutorial for performing enrichment analysis with hdWGCNA.
- Vignettes overview
Document showing an overview of the different analysis vignettes.
- Isoform co-expression network analysis with PacBio MAS-Seq
Full Seurat clustering and hdWGCNA analysis tutorial of PacBio MAS-Seq PBMC dataset.
- Module preservation and reproducibility
Tutorial for performing module preservation tests in hdWGCNA.
- Module Trait Correlation
Tutorial for identifying relationships between hdWGCNA modules with biological and technical variables.
- Motif Analysis
Tutorial for identifying transcription factor binding motifs that are related to hdWGCNA modules.
- Network Visualization
Tutorial for visualizing the hdWGCNA networks using igraph.
- Alternative metacell algorithms
Tutorial for performing co-expression network analysis using alternative metacell aggregation algorithms.
- Cross-species and cross-modality analysis
Projecting hdWGCNA co-expression modules across species and -omics modalities.
- Projecting modules to new datasets
Tutorial for applying the core functions of hdWGCNA.
- hdWGCNA with pseudobulk data
Tutorial for running hdWGCNA with pseudobulk data rather than metacells/metaspots .
- Co-expression module dynamics with pseudotime
Full Seurat clustering and hdWGCNA analysis tutorial of PacBio MAS-Seq PBMC dataset.
- Using SCTransform normalized data
Tutorial demonstrating hdWGCNA with SCTransform normalized data.
- hdWGCNA in spatial transcriptomics
Tutorial for applying the core functions of hdWGCNA in spatial transcriptomics data.
- Transcription factor regulatory network analysis
Tutorial for using hdWGCNA for transcription factor regulatory network analysis.