Skip to contents

hdWGCNA 0.4.00

Get started
- Core functionality
- hdWGCNA in single-cell data
- hdWGCNA in spatial transcriptomics data
- Isoform co-expression network analysis with PacBio MAS-Seq
- Network visualization
- Biological context for co-expression modules
- Differential module eigengene (DME) analysis
- Module trait correlation
- Enrichment analysis
- Exploring modules in external datasets
- Projecting modules to new datasets
- Module preservation and reproducibility
- Cross-species and cross-modality analysis
- Advanced topics
- Transcription factor regulatory network analysis
- Consensus network analysis
- hdWGCNA with pseudobulk data
- Co-expression module dynamics with pseudotime
- Other
- Module customization
- Alternative metacell algorithms
- Using SCTransform normalized data
- All vignettes
Reference
News

GetTOM

Source: R/getters_and_setters.R

GetTOM.Rd

GetTOM

Usage

GetTOM(seurat_obj, wgcna_name = NULL)

Arguments

seurat_obj: A Seurat object
wgcna_name: The name of the hdWGCNA experiment in the seurat_obj@misc slot

On this page

Developed by Sam Morabito, Swarup Lab.

Site built with pkgdown 2.1.0.