ModuleExprScore.Rd
Computes a module score for each co-expression module using Seurat AddModuleScore or UCell.
ModuleExprScore(
seurat_obj,
n_genes = 25,
method = "Seurat",
wgcna_name = NULL,
...
)
A Seurat object
the number of genes to use for each module, ranked by kME. Setting n_genes = 'all' uses all of the genes in a module
selected method for module scoring, valid choices are "Seurat" or "UCell"
The name of the hdWGCNA experiment in the seurat_obj@misc slot
seurat_obj with module scores computed for the selected wgcna experiment
ModuleExprScore provides an alternative function to ModuleEigengenes for summarizing the expression level of each module. The user can choose between Seurat AddModuleScore or UCell using the method parameter.