Performs Fisher's Exact Test for overlap between DEGs and hdWGCNA modules.
Usage
OverlapModulesDEGs(
seurat_obj,
deg_df,
fc_cutoff = 0.5,
group_col = "cluster",
wgcna_name = NULL,
...
)Arguments
- seurat_obj
A Seurat object
- deg_df
DEG table formatted like the output from Seurat's FindMarkers
- fc_cutoff
log fold change cutoff for DEGs to be included in the overlap test
- group_col
the name of the column in deg_df containing the cell grouping information
- wgcna_name
The name of the hdWGCNA experiment in the seurat_obj@misc slot