PlotDMEsLollipop — PlotDMEsLollipop • hdWGCNA

Plotting function for the results of FindDMEs and FindAllDMEs

PlotDMEsLollipop(
  seurat_obj,
  DMEs,
  wgcna_name,
  group.by = NULL,
  comparison = NULL,
  pvalue,
  avg_log2FC = "avg_log2FC"
)

Arguments

seurat_obj: A Seurat object
DMEs: dataframe output from FindDMEs or FindAllDMEs
group.by: the column name of the selected comparison in the DMEs dataframe
comparison: character vector or a list of character vectors containing the comparison in the DMEs dataframe
pvalue: p_value or fdr used for the comparison in the DMEs dataframe

A ggplot object PlotDMEsLollipop