PlotModulePreservationLollipop

Plots a ranked lollipop plot of co-expression modules based on the results of module preservation analysis.

Usage

PlotModulePreservationLollipop(
  seurat_obj,
  name,
  features = NULL,
  fdr = TRUE,
  wgcna_name = NULL
)

Arguments

seurat_obj

A Seurat object

name

The name to give the module preservation analysis.

features

The name of the module preservation features to plot.

fdr

logical indicating whether or not to plot FDR-corrected p-values

wgcna_name

The name of the hdWGCNA experiment in the seurat_obj@misc slot

Value

ggplot object containing the PlotModulePreservationLollipop

Details

PlotModulePreservationLollipop generates a lollipop plot showing module preservation results. If the module preservation test was performed using the WGCNA method, the statistic that will be shown is the Z-summary preservation statistic. If the analysis was performed using NetRep, then the statistic that will be shown is the FDR corrected averaged p-values from the module preservation permutation test.