Plotting function for Module Preservation statistics
Usage
PlotModuleTraitCorrelation(
seurat_obj,
high_color = "red",
mid_color = "grey90",
low_color = "blue",
label = NULL,
label_symbol = "stars",
plot_max = NULL,
text_size = 2,
text_color = "black",
text_digits = 3,
combine = TRUE,
wgcna_name = NULL
)Arguments
- seurat_obj
A Seurat object
- high_color
color for positive correlation
- mid_color
color for zero correlation
- low_color
color for negative correlation
- label
logical determining whether to add p-val label in each cell of the heatmap
- label_symbol
show the labels as 'stars' or as 'numeric'
- plot_max
maximum value of correlation to show on the colorbar
- text_size
size of the labels
- text_color
color of the text labels
- text_digits
how many digits to show in the text labels
- combine
logical determining whether to plot as one combined plot (TRUE) or to return individual plots as a list (FALSE)