Plots the top target genes within a specific TF regulon
Usage
RegulonBarPlot(
seurat_obj,
selected_tf,
cutoff = 0.2,
top_n = Inf,
TFs_only = FALSE,
high_color = "orange2",
mid_color = "white",
low_color = "dodgerblue",
wgcna_name = NULL
)Arguments
- seurat_obj
A Seurat object
- cutoff
Cutoff for the edge weights, links below this value will not be included.
- top_n
Number of top and bottom target genes to include in the plot.
- TFs_only
Logical indicating whether or not to use only TFs in the plot or to use TFs and other genes.
- high_color
Color corresponding to positive edge weights
- mid_color
Color corresponding to edge weights close to 0
- low_color
Color corresponding to negative edge weights
- wgcna_name
The name of the hdWGCNA experiment in the seurat_obj@misc slot
- selected_tfs
A TF whose target genes will be shown