RunEnrichr — RunEnrichr • hdWGCNA

Run Enrichr gene set enrichment tests on hdWGCNA modules

RunEnrichr(
  seurat_obj,
  dbs = c("GO_Biological_Process_2021", "GO_Cellular_Component_2021",
    "GO_Molecular_Function_2021"),
  max_genes = 100,
  wait = TRUE,
  wait_time = 5,
  wgcna_name = NULL,
  ...
)

Arguments

seurat_obj: A Seurat object
dbs: character vector of EnrichR databases
max_genes: Max number of genes to include per module, ranked by kME.
wait: logical indicating whether or not to wait some time between sending requests to the EnrichR server.
wait_time: the number of seconds to wait between sending requests to the EnrichR server. Value must be less than 60.
wgcna_name: The name of the hdWGCNA experiment in the seurat_obj@misc slot