Run Enrichr gene set enrichment tests on hdWGCNA modules
Usage
RunEnrichrRegulons(
seurat_obj,
dbs = c("GO_Biological_Process_2021", "GO_Cellular_Component_2021",
"GO_Molecular_Function_2021"),
depth = 1,
use_regulons = TRUE,
min_genes = 5,
wait = TRUE,
wait_time = 5,
wgcna_name = NULL,
...
)Arguments
- seurat_obj
A Seurat object
- dbs
character vector of EnrichR databases
- wait
logical indicating whether or not to wait some time between sending requests to the EnrichR server.
- wait_time
the number of seconds to wait between sending requests to the EnrichR server. Value must be less than 60.
- wgcna_name
The name of the hdWGCNA experiment in the seurat_obj@misc slot
- max_genes
Max number of genes to include per module, ranked by kME.