SetupForWGCNA — SetupForWGCNA • hdWGCNA

Create a slot in a Seurat object to store hdWGCNA data

SetupForWGCNA(
  seurat_obj,
  wgcna_name,
  features = NULL,
  metacell_location = NULL,
  ...
)

Arguments

seurat_obj: A Seurat object
wgcna_name: name of the WGCNA experiment
features: list of features to use for WGCNA
metacell_location: name of the WGCNA experiment to copy the metacell object from
...: additional parameters to pass to SelectNetworkGenes

Details

SetupForWGCNA creates a new slot in the Seurat object (seurat_obj) to store an hdWGCNA experiment with a given name (wgcna_name). This function calls on SelectNetworkGenes to specify which features will be used for network analysis. If there is another hdWGCNA experiment already in the seurat_obj, the same metacell/metaspot object can be used by specifying the name of the hdWGCNA experiment to the metacell_location parameter.